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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6198076_6201807_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
6198076 - 6201807
Intron Length:
3732

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTGGTGCA
5'SS Class:
major
3'SS Sequence:
TTCTTTTGTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGCTAT
U12 Branch Point Sequence:
TTCTTTTGTACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.2
67.1
38.4
Major BPS
58.7
0.22
1.5
58.5
47.9
Major PPT
86.6
0.82
0.8
83.2
32
Minor 5ss
27.9
-2.5
3.1
33.2
41.8
Minor BPS
51.4
0.04
1.8
66.96
39.5

Associated Gene:

Gene:
CSDE1
Ensembl Gene ID:
ENSAPLG00000008797
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034595
6186318 - 6202203
15886
ENSAPLT00000032863
6186318 - 6202203
15886
ENSAPLT00000009248
6186318 - 6202203
15886
ENSAPLT00000039543
6186318 - 6202203
15886