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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6222719_6223299_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6222719 - 6223299
Intron Length:
581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCATAA
U12 Branch Point Sequence:
GTTTCCTTCATA
Flanking Amino Acid:
YNALTCEGCKGFFRRSITKN
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
73.3
36.4
Major BPS
65
0.37
1
61.3
37
Major PPT
87.8
0.85
0.6
84.9
22.8
Minor 5ss
30.8
-2.2
3.3
41.8
45
Minor BPS
71.2
0.66
1.7
80.01
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008338
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008665
6220648 - 6227589
6942