Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6223441_6224301_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6223441 - 6224301

Intron Length:

861

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTAAGTGCT

5'SS Class:

strong_major

3'SS Sequence:

CTGTGCCTCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACATAAT

U12 Branch Point Sequence:

TGATACATAATT

Flanking Amino Acid:

KCKAVGMLAECLLTEVQCKS

Intron Amino Acid Position:

189

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.5

0.81

80.9

31.3

Major BPS

66.4

0.41

1.1

66.3

36.5

Major PPT

71.9

0.49

0.9

64.6

36.6

Minor 5ss

37.8

-1.4

3.3

55.2

42.1

Minor BPS

57.6

0.32

1.8

76.19

39.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008338

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008665

6220648 - 6227589

6942