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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6224442_6224545_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6224442 - 6224545
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGGGATAT
5'SS Class:
major
3'SS Sequence:
TTTTTTTAAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTAAACA
Flanking Amino Acid:
HVSSTTRSGKIPERMELTPG
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.7
0.44
1
67.5
34
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.5
0.75
0.9
81.8
33.7
Minor 5ss
34.5
-1.8
3.4
46.5
43.5
Minor BPS
71
0.66
1.6
82.25
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008338
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008665
6220648 - 6227589
6942