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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6227214_6227350_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6227214 - 6227350
Intron Length:
137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCGCT
5'SS Class:
strong_major
3'SS Sequence:
CGGTGCTCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGGTAAC
U12 Branch Point Sequence:
GTGCCGGTAACC
Flanking Amino Acid:
LLVATTVFFSDRPLLRNKRH
Intron Amino Acid Position:
424

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
78.8
35.5
Major BPS
48.8
-0
1.3
50.7
41.5
Major PPT
65.1
0.34
1
57.7
38.5
Minor 5ss
39
-1.2
3.4
56.7
47.6
Minor BPS
44.9
-0.4
2.6
60.38
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008338
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008665
6220648 - 6227589
6942