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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_622754_624282_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
622754 - 624282
Intron Length:
1529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTCAGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAGGAT
U12 Branch Point Sequence:
TTTGTCTCAGCA
Flanking Amino Acid:
APLSYSKILQDRTEFSTDNC
Intron Amino Acid Position:
757

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
59.7
0.24
1.5
59.7
46.7
Major PPT
78.6
0.64
0.9
74.9
34.7
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
53.6
0.11
1.9
71.1
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014526
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046125
622232 - 637666
15435