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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6241731_6242713_F

Intron Information:

Intron Rank:
134694
Intron Class:
major
Intron Phase:
Intron Coordinates:
6241731 - 6242713
Intron Length:
983

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGAATA
5'SS Class:
major
3'SS Sequence:
TCTTCTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
ATACTCACAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1.2
80.8
33.7
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
89
0.88
0.6
84.5
23.3
Minor 5ss
32.5
-2
2.9
40.7
45.1
Minor BPS
48.1
-0.1
1.8
61.71
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022429
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025245
6241560 - 6243575
2016