About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6242818_6243421_F

Intron Information:

Intron Rank:
134695
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
6242818 - 6243421
Intron Length:
604

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGC|GTATGATGA
5'SS Class:
weak_major
3'SS Sequence:
TATTTTAAATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTATTTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.1
0.14
1.3
52.2
41.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
68.4
0.42
1
69.2
40.5
Minor 5ss
44.3
-0.6
2.8
50.9
46
Minor BPS
70.8
0.73
1.3
85.51
34.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022429
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025245
6241560 - 6243575
2016