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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_624873_625261_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
624873 - 625261
Intron Length:
389

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
GTTCTCTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTAACAA
U12 Branch Point Sequence:
GTTCTCTCTACA
Flanking Amino Acid:
LLRLGGADGVDEAIRKIVAL
Intron Amino Acid Position:
648

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
76.7
31.8
Major BPS
47.6
-0.1
1.2
55.4
40.4
Major PPT
83
0.74
0.8
76.7
32.1
Minor 5ss
30
-2.3
3.2
38.4
40.8
Minor BPS
49.7
-0
1.9
65.87
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014526
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046125
622232 - 637666
15435