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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6253924_6254009_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6253924 - 6254009
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCATCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTTTTCATCT
Flanking Amino Acid:
SQLYAMTPKKKPTTSNLKAP
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
80.1
28.4
Major BPS
100
1.24
0.5
100
0
Major PPT
82.9
0.74
0.7
82.5
27.7
Minor 5ss
46.6
-0.3
2.5
60.6
44.5
Minor BPS
56.6
0.29
1.8
77.97
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017671
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020899
6253316 - 6254153
838