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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_625400_626127_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
625400 - 626127
Intron Length:
728

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGACCC
5'SS Class:
major
3'SS Sequence:
GTTCTTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TGATTCTGAACA
Flanking Amino Acid:
LRHVQGPAPPAEAEQPDGYY
Intron Amino Acid Position:
602

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
59.5
39.8
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
85.5
0.8
0.8
77.2
37.1
Minor 5ss
26.4
-2.7
3.1
33.7
41.8
Minor BPS
68.1
0.56
1.4
74.01
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014526
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046125
622232 - 637666
15435