About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_625400_634150_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
625400 - 634150
Intron Length:
8751

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
GTTCTTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TGATTCTGAACA
Flanking Amino Acid:
KKEPGQKLLFSRGRAAGWLL
Intron Amino Acid Position:
361

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
82.1
24.6
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
85.5
0.8
0.8
77.2
37.1
Minor 5ss
27.3
-2.6
2.7
30.6
42.8
Minor BPS
68.1
0.56
1.4
74.01
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014526
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037178
625258 - 637666
12409