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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_626850_634150_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
626850 - 634150
Intron Length:
7301

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGAAAAT
U12 Branch Point Sequence:
TTTTCCTTCACA
Flanking Amino Acid:
KKEPGQKLLFSKVQALAAEQ
Intron Amino Acid Position:
361

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
82.1
24.6
Major BPS
55.4
0.14
1.3
61.7
41.5
Major PPT
88.4
0.86
0.6
83.8
24.4
Minor 5ss
27.3
-2.6
2.7
30.6
42.8
Minor BPS
81.8
0.99
1.6
91.36
30.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014526
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046125
622232 - 637666
15435