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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6268949_6270578_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6268949 - 6270578
Intron Length:
1630

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTAAA
5'SS Class:
major
3'SS Sequence:
CCTTCTCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
GATCCCTAAATT
Flanking Amino Acid:
IVGIAIAGITIFGMIFSMVL
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1
73.4
32.4
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
80.7
0.69
0.7
73.1
31.8
Minor 5ss
31.8
-2.1
2.7
38.8
40.3
Minor BPS
62.1
0.46
1.7
75.68
40.8

Associated Gene:

Gene:
TSPAN2
Ensembl Gene ID:
ENSAPLG00000007499
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007785
6268260 - 6288828
20569