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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6270663_6271418_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6270663 - 6271418
Intron Length:
756

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTCAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
AATCTTTTAATT
Flanking Amino Acid:
PCPENIQMPKNCLVEIQNVL
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.6
1.17
0.7
96.8
6.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
80.7
0.69
0.9
77.7
35.5
Minor 5ss
26.9
-2.6
4.1
42.9
44.7
Minor BPS
67.8
0.64
1.1
76.5
33.8

Associated Gene:

Gene:
TSPAN2
Ensembl Gene ID:
ENSAPLG00000007499
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007785
6268260 - 6288828
20569