Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6271494_6272680_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6271494 - 6272680

Intron Length:

1187

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCT|GTGAGTAGC

5'SS Class:

major

3'SS Sequence:

CTTTCTCACTTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTATGAT

U12 Branch Point Sequence:

TCTTTCTCACTT

Flanking Amino Acid:

NRTIYHYHLALQCCGKDNME

Intron Amino Acid Position:

149

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.3

0.48

1.1

65.6

40.2

Major BPS

84.6

0.86

41.2

Major PPT

74.6

0.55

0.8

74.1

29.8

Minor 5ss

33.5

-1.9

2.8

46.7

41.7

Minor BPS

55.7

0.26

1.8

75.15

42.4

Associated Gene:

Gene:

TSPAN2

Ensembl Gene ID:

ENSAPLG00000007499

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007785

6268260 - 6288828

20569