About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6273946_6285465_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6273946 - 6285465
Intron Length:
11520

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TGATTTTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
ACTTTCTTACAT
Flanking Amino Acid:
DKKPPEYFFIGLYVLVGAGA
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
85.9
25.4
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
77.9
0.63
0.9
72.7
37.4
Minor 5ss
43.9
-0.7
2.8
55
43.6
Minor BPS
59.3
0.37
1.7
74.89
42

Associated Gene:

Gene:
TSPAN2
Ensembl Gene ID:
ENSAPLG00000007499
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007785
6268260 - 6288828
20569