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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6285569_6288759_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6285569 - 6288759
Intron Length:
3191

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGCGCC
5'SS Class:
major
3'SS Sequence:
ATGTATTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTGTTATTAAAG
Flanking Amino Acid:
LLFVFNLSFWLAGLAVIAFG
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.57
1
60.2
39.4
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
80.8
0.69
0.9
77.6
40.7
Minor 5ss
31.7
-2.1
3.2
34
41.8
Minor BPS
57.9
0.11
1.8
65.49
42.1

Associated Gene:

Gene:
TSPAN2
Ensembl Gene ID:
ENSAPLG00000007499
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007785
6268260 - 6288828
20569