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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_6318872_6321363_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
6318872 - 6321363
Intron Length:
2492

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCACA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCCTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
TTTGTCCTAATA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
80.7
33.8
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
74.6
0.55
0.9
70.8
34.8
Minor 5ss
39.7
-1.2
2.8
49.8
46.2
Minor BPS
61.3
0.35
1.8
75.29
36.6

Associated Gene:

Gene:
NGF
Ensembl Gene ID:
ENSAPLG00000001822
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001815
6317400 - 6321503
4104