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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_644933_667276_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
644933 - 667276
Intron Length:
22344

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGATGT
5'SS Class:
major
3'SS Sequence:
TTTCTTCTCCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
CCTTCCAAAATA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
68.5
39.2
Major BPS
62
0.3
1
62.3
30.4
Major PPT
83.3
0.75
0.7
77.4
31.3
Minor 5ss
33.8
-1.8
3.1
39.1
46.1
Minor BPS
50
-0
2
63.54
43.4

Associated Gene:

Gene:
KCTD20
Ensembl Gene ID:
ENSAPLG00000014389
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042387
644350 - 674108
29759