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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_682817_683433_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
682817 - 683433
Intron Length:
617

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGCT
5'SS Class:
strong_major
3'SS Sequence:
CTATGCCTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
TTTTTCCTATGC
Flanking Amino Acid:
FPESDILKPTVATINHPDTD
Intron Amino Acid Position:
506

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
81.2
30.6
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
77.6
0.62
0.9
73.6
36.7
Minor 5ss
34.7
-1.7
3.3
50.4
46
Minor BPS
49
-0
2.2
70.36
41.2

Associated Gene:

Gene:
STK38
Ensembl Gene ID:
ENSAPLG00000013800
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014402
682151 - 695624
13474