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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_683857_684594_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
683857 - 684594
Intron Length:
738

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCCATTC
5'SS Class:
major
3'SS Sequence:
CCTTCCATCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTCATT
Flanking Amino Acid:
ISDKAKDLILRFCCEWEHRI
Intron Amino Acid Position:
442

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.2
0.36
1.2
63.1
38.4
Major BPS
100
1.24
0.5
100
0
Major PPT
74.5
0.55
0.8
65.7
34.6
Minor 5ss
41.5
-0.9
3.3
59.1
45.6
Minor BPS
65.8
0.58
2
89.07
35.8

Associated Gene:

Gene:
STK38
Ensembl Gene ID:
ENSAPLG00000013800
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014402
682151 - 695624
13474