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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_685035_685636_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
685035 - 685636
Intron Length:
602

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTACTTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTAAAT
U12 Branch Point Sequence:
TTTTCTCTAAAT
Flanking Amino Acid:
ETWKRNRRQLAFSTVGTPDY
Intron Amino Acid Position:
362

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
77.6
30.7
Major BPS
69.8
0.49
1.1
75.5
35.2
Major PPT
82.7
0.74
0.9
80.7
36.7
Minor 5ss
33.1
-1.9
3.2
40.3
40.2
Minor BPS
69.7
0.7
1.7
90.15
33.3

Associated Gene:

Gene:
STK38
Ensembl Gene ID:
ENSAPLG00000013800
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014402
682151 - 695624
13474