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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_686494_687545_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
686494 - 687545
Intron Length:
1052

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCACT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATATATTT
Flanking Amino Acid:
KPDNLLLDSKGHVKLSDFGL
Intron Amino Acid Position:
307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
77.1
37.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.6
0.76
0.8
76.8
37.4
Minor 5ss
48.1
-0.2
2.5
67.2
43.7
Minor BPS
49.8
0.07
2
77.67
39

Associated Gene:

Gene:
STK38
Ensembl Gene ID:
ENSAPLG00000013800
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014402
682151 - 695624
13474