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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_687701_688619_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
687701 - 688619
Intron Length:
919

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATCACA
5'SS Class:
strong_major
3'SS Sequence:
TTGATGCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TTTACCTTTGCT
Flanking Amino Acid:
LYLIMEFLPGGDMMTLLMKK
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
73.5
37.2
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
71.5
0.48
1
62.6
44.1
Minor 5ss
39.7
-1.2
2.8
50.3
45.6
Minor BPS
46.8
-0.1
3.6
85.18
41

Associated Gene:

Gene:
STK38
Ensembl Gene ID:
ENSAPLG00000013800
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014402
682151 - 695624
13474