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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_688744_690638_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
688744 - 690638
Intron Length:
1895

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATAGC
5'SS Class:
strong_major
3'SS Sequence:
TGTATATCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTGTAATTAATC
Flanking Amino Acid:
RKADMLEKEQVGHIRAERDI
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
74.6
35.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
77.2
0.61
0.9
69.8
40.5
Minor 5ss
30
-2.3
2.7
36.7
40.4
Minor BPS
60.8
0.32
1.8
72.64
38.3

Associated Gene:

Gene:
STK38
Ensembl Gene ID:
ENSAPLG00000013800
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014402
682151 - 695624
13474