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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_691416_691560_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
691416 - 691560
Intron Length:
145

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTAAT
5'SS Class:
strong_major
3'SS Sequence:
CCATAAACTCTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTTCCATAAAC
Flanking Amino Acid:
MEEEGLKDEEKRIRRSAHAQ
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
88.9
24.6
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
59.2
0.21
0.9
48.7
39
Minor 5ss
37.5
-1.4
2.8
51.2
45.3
Minor BPS
72.7
0.69
1.7
85.19
32.4

Associated Gene:

Gene:
STK38
Ensembl Gene ID:
ENSAPLG00000013800
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014402
682151 - 695624
13474