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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_691613_693851_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
691613 - 693851
Intron Length:
2239

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAATTC
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTCTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTCTTCTAATT
Flanking Amino Acid:
LIAQHEEREMRQKKLEQMME
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
78.4
30.1
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
79.2
0.66
0.8
77.4
31.3
Minor 5ss
41.9
-0.9
3.2
59
45.7
Minor BPS
61.7
0.44
1.6
81.49
34

Associated Gene:

Gene:
STK38
Ensembl Gene ID:
ENSAPLG00000013800
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014402
682151 - 695624
13474