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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_693985_695377_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
693985 - 695377
Intron Length:
1393

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGCGCC
5'SS Class:
major
3'SS Sequence:
TCTTTCCTAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTCAA
U12 Branch Point Sequence:
TCTTTCCTAATA
Flanking Amino Acid:
RLAAPFPGGSAMAMTGPTPC
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
65.5
42
Major BPS
66.8
0.42
1.1
69.4
37.7
Major PPT
77.3
0.61
0.8
74.1
29.6
Minor 5ss
38.1
-1.3
3.3
52.1
44.7
Minor BPS
65.6
0.49
1.6
75.29
36.6

Associated Gene:

Gene:
STK38
Ensembl Gene ID:
ENSAPLG00000013800
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014402
682151 - 695624
13474