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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_699684_700515_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
699684 - 700515
Intron Length:
832

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGCAGTAAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AACTGAA
U12 Branch Point Sequence:
TGTTTGCTAACT
Flanking Amino Acid:
ACFATSQDTEKAVTEHQLMH
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
80.7
33.7
Major BPS
65.6
0.39
0.9
55.4
32.7
Major PPT
57
0.16
1.2
57.3
41.6
Minor 5ss
42.8
-0.8
2.9
58
40.7
Minor BPS
53.5
0.19
2.3
81.08
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025294
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043618
698383 - 700607
2225