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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_710698_711245_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
710698 - 711245
Intron Length:
548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATGT
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TGTCCCTGGAAA
Flanking Amino Acid:
AADAVRELDGRTLCGCRVRV
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
74.9
36.1
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
82.6
0.73
0.7
75.5
32.9
Minor 5ss
39
-1.2
3.2
56.6
47.5
Minor BPS
54.5
0.14
1.6
67.31
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013776
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014358
710492 - 714356
3865