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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_729459_729958_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
729459 - 729958
Intron Length:
500

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCCTGCCCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CATTTTTTAACC
Flanking Amino Acid:
HLKRGQATIKDFYSSKRRVV
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.9
1.06
0.6
93
14.8
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
75.5
0.57
0.8
65.7
36.1
Minor 5ss
40.7
-1
3
57.8
46.8
Minor BPS
73.7
0.72
1.2
74.61
36.2

Associated Gene:

Gene:
CDKN1A
Ensembl Gene ID:
ENSAPLG00000028937
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045973
729056 - 730008
953