Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_734815_734889_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

734815 - 734889

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAGGAT

5'SS Class:

strong_major

3'SS Sequence:

CCTTTATTCTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTAAT

U12 Branch Point Sequence:

TTTTTCCTAATT

Flanking Amino Acid:

TGFITRSDMQKLQEKNFPCS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

75.4

34.2

Major BPS

81.9

0.79

0.9

80.1

Major PPT

78.2

0.63

0.8

30.4

Minor 5ss

30.2

-2.3

3.7

45.9

49.3

Minor BPS

74.5

0.85

1.6

92.26

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023681

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014028

734613 - 745033

10421

ENSAPLT00000019011

734613 - 741745

7133