Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_735818_736162_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

735818 - 736162

Intron Length:

345

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTGAGTCAC

5'SS Class:

strong_major

3'SS Sequence:

CTGTCCCTACCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTCAA

U12 Branch Point Sequence:

GACTCCTCAACC

Flanking Amino Acid:

KKEVLEVTLNKCVAEHNLEV

Intron Amino Acid Position:

205

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.1

0.71

0.9

71.2

34.5

Major BPS

73.1

0.58

73.8

32.3

Major PPT

70.7

0.47

0.9

38.3

Minor 5ss

30.8

-2.2

2.9

35.8

34.5

Minor BPS

65.6

0.47

1.6

69.04

41.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023681

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047065

735245 - 745033

9789

ENSAPLT00000040427

734613 - 741745

7133

ENSAPLT00000019011

734613 - 741745

7133

ENSAPLT00000014028

734613 - 745033

10421