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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_736987_737449_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
736987 - 737449
Intron Length:
463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTAGC
5'SS Class:
major
3'SS Sequence:
TCTTTGCTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
CTTTGCTTATAG
Flanking Amino Acid:
AVAQEHMEELQDRAVAELPG
Intron Amino Acid Position:
330

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1
66.3
39.5
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
81.8
0.72
0.8
76.5
32.3
Minor 5ss
32.8
-2
2.7
42.4
38.3
Minor BPS
48.5
-0.2
2.2
60.22
47.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023681
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047065
735245 - 745033
9789
ENSAPLT00000040427
734613 - 741745
7133
ENSAPLT00000019011
734613 - 741745
7133
ENSAPLT00000014028
734613 - 745033
10421