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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_758054_759340_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
758054 - 759340
Intron Length:
1287

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATATAATTAATT
Flanking Amino Acid:
RYPILVAVYKGLLMLGLVLL
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.5
36.8
Major BPS
83
0.82
0.8
82
24.9
Major PPT
88.5
0.87
0.6
84
24.1
Minor 5ss
38.5
-1.3
3.4
55.9
48.3
Minor BPS
60.5
0.41
1.8
78.01
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013324
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013885
757865 - 773418
15554