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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_759507_770089_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
759507 - 770089
Intron Length:
10583

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGGAAA
5'SS Class:
major
3'SS Sequence:
TATTTCCTTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTTCTCTTATTT
Flanking Amino Acid:
LPIAKKYMLEKCQDWWTAGC
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
68.6
38
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
76.6
0.6
1
80.3
31.7
Minor 5ss
32.8
-2
3.1
36
41.8
Minor BPS
68.2
0.65
1.5
84.89
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013324
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013885
757865 - 773418
15554