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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_772139_772788_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
772139 - 772788
Intron Length:
650

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
GCTCTCATCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
GGCTTCTGAAAT
Flanking Amino Acid:
LIRHPDLGNKSYSLHGLFAV
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
85.9
23.9
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
67.3
0.39
0.9
58.7
37
Minor 5ss
29.7
-2.3
3
39.4
46.1
Minor BPS
54.4
0.22
1.6
67.61
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013324
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013885
757865 - 773418
15554