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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_783852_784661_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
783852 - 784661
Intron Length:
810

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTAAGTCCT
5'SS Class:
major
3'SS Sequence:
CTTCTGCATCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAC
U12 Branch Point Sequence:
CTTTCCTTACAC
Flanking Amino Acid:
MYLLVCNYYPPGNVKGRKPY
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.45
1.3
66.6
44.7
Major BPS
68.9
0.47
1
59.6
38.6
Major PPT
74.7
0.56
0.9
66
40
Minor 5ss
38.7
-1.3
3
56.4
40.7
Minor BPS
65.7
0.47
1.8
75.43
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013282
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013822
780243 - 787227
6985