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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_784751_785461_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
784751 - 785461
Intron Length:
711

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TACAAGGACATAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTTTTAG
U12 Branch Point Sequence:
TTGGTTTTAGGC
Flanking Amino Acid:
EGRVCVKSLCEAWTAMGQLT
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
79.4
28.8
Major BPS
54.8
0.12
1.7
57.4
49.1
Major PPT
48.7
-0
1
38.7
38.5
Minor 5ss
32.1
-2
3.1
36.8
41.9
Minor BPS
46.3
-0.3
1.9
56.7
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013282
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013822
780243 - 787227
6985