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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_79230_79305_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
79230 - 79305
Intron Length:
76

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CCTGCCCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGTGAC
U12 Branch Point Sequence:
CCCACAGTGACT
Flanking Amino Acid:
MGHSNTEIDVTSLRTPELTW
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
74
36.6
Major BPS
51.2
0.03
1.2
44.4
38.7
Major PPT
73.3
0.52
0.8
65.7
30.3
Minor 5ss
31
-2.2
3.2
37
41.8
Minor BPS
42.4
-0.5
2.2
56.5
46.1

Associated Gene:

Gene:
AHCYL1
Ensembl Gene ID:
ENSAPLG00000003315
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023197
75942 - 82950
7009
ENSAPLT00000003445
72836 - 81950
9115
ENSAPLT00000035130
76100 - 81691
5592