Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_81338_81774_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

81338 - 81774

Intron Length:

437

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGAGTGAA

5'SS Class:

strong_major

3'SS Sequence:

CTCTCCTTCCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGTTCAC

U12 Branch Point Sequence:

GATGAGTTCACT

Flanking Amino Acid:

QDVYLLPKKMDEYVASLHLP

Intron Amino Acid Position:

254

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.4

0.76

0.9

73.7

32.5

Major BPS

66.1

0.4

1.1

69.1

37.9

Major PPT

0.67

0.7

72.2

32.4

Minor 5ss

26.1

-2.7

2.9

22.6

37.5

Minor BPS

-0.5

2.5

62.7

46.8

Associated Gene:

Gene:

AHCYL1

Ensembl Gene ID:

ENSAPLG00000003315

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023197

75942 - 82950

7009

ENSAPLT00000003445

72836 - 81950

9115