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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_817861_818778_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
817861 - 818778
Intron Length:
918

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAATTAGT
5'SS Class:
major
3'SS Sequence:
TAAAACAGAAGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TACCCCTGAAAG
Flanking Amino Acid:
SSYGSGTRRDKKQPHYKEQC
Intron Amino Acid Position:
332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.5
0.41
1.1
68.7
42
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
40.7
-0.5
1.7
33.3
39.6
Minor 5ss
39.7
-1.2
2.9
57.2
41
Minor BPS
52.4
-0
1.7
56.84
43.7

Associated Gene:

Gene:
MTCH1
Ensembl Gene ID:
ENSAPLG00000012793
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021238
817823 - 828516
10694