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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_821329_825162_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
821329 - 825162
Intron Length:
3834

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTGAGAAGC
5'SS Class:
major
3'SS Sequence:
TTTGCCATTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTCAT
U12 Branch Point Sequence:
ATGCCCATATTT
Flanking Amino Acid:
VQFIGRECGHDGVVPHIVGD
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.7
0.4
1
59.7
39.7
Major BPS
73.5
0.58
1
73.6
32.5
Major PPT
80.8
0.69
0.9
74.4
35
Minor 5ss
29.6
-2.3
2.9
31.5
36
Minor BPS
49.1
0.01
1.9
68.95
42

Associated Gene:

Gene:
MTCH1
Ensembl Gene ID:
ENSAPLG00000012793
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013341
818423 - 829326
10904