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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_825174_825212_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
825174 - 825212
Intron Length:
39

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTCAAATAC
5'SS Class:
weak_major
3'SS Sequence:
TCTGAATGAAGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
CAGCTCTGAATG
Flanking Amino Acid:
RCMVQFIGRECGHDGVVPHI
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.1
0.17
1.3
59.1
34.8
Major BPS
69.8
0.49
1
61
37.5
Major PPT
45.4
-0.2
1.7
47
43.8
Minor 5ss
34.7
-1.7
3.1
42.3
38.8
Minor BPS
48
-0.2
1.5
46.29
40.7

Associated Gene:

Gene:
MTCH1
Ensembl Gene ID:
ENSAPLG00000012793
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013341
818423 - 829326
10904