Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_825710_826023_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

825710 - 826023

Intron Length:

314

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGAAAT

5'SS Class:

strong_major

3'SS Sequence:

CTCCCTTTCCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAC

U12 Branch Point Sequence:

TTTCACATAGCT

Flanking Amino Acid:

KTSLRKVVKETSHEMMMQCV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.6

0.93

0.8

85.9

23.9

Major BPS

90.1

0.99

0.7

91.6

20.3

Major PPT

79.2

0.66

0.7

71.6

32.8

Minor 5ss

29.7

-2.3

39.4

46.1

Minor BPS

51.8

0.13

80.2

40.8

Associated Gene:

Gene:

MTCH1

Ensembl Gene ID:

ENSAPLG00000012793

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021238

817823 - 828516

10694

ENSAPLT00000013341

818423 - 829326

10904