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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_844928_846201_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
844928 - 846201
Intron Length:
1274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACTAAT
5'SS Class:
strong_major
3'SS Sequence:
AACTTTCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAA
U12 Branch Point Sequence:
TTTTTTCCAACT
Flanking Amino Acid:
AIKTRAPQLGGSFAVWGGLF
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1.1
87
30
Major BPS
73
0.57
1
73.6
28.6
Major PPT
68.6
0.42
1
63.1
37.5
Minor 5ss
42.9
-0.8
2.7
59.7
44.8
Minor BPS
59.8
0.39
1.9
84.49
36

Associated Gene:

Gene:
TIMM17A
Ensembl Gene ID:
ENSAPLG00000016139
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016838
840985 - 848523
7539