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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_846842_848452_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
846842 - 848452
Intron Length:
1611

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTATTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTATTTGACT
Flanking Amino Acid:
TRFASTQFPNGPQFSDDPSQ
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
69.6
41.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80.9
0.69
0.8
75.6
31.8
Minor 5ss
32.8
-2
3.1
39.9
40.3
Minor BPS
70.6
0.73
1.4
85.08
34.9

Associated Gene:

Gene:
TIMM17A
Ensembl Gene ID:
ENSAPLG00000016139
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016838
840985 - 848523
7539