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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_852097_852401_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
852097 - 852401
Intron Length:
305

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
CACTTCCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
GCTTTCTCACTT
Flanking Amino Acid:
RFFPGKFDIWFQSHQIFHVL
Intron Amino Acid Position:
335

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
68.5
38.7
Major BPS
85
0.87
0.8
85.6
23
Major PPT
72
0.49
0.8
65.6
29.9
Minor 5ss
26.2
-2.7
2.9
22.7
37.4
Minor BPS
49.9
0.07
1.8
68.05
43.4

Associated Gene:

Gene:
ADIPOR1
Ensembl Gene ID:
ENSAPLG00000016148
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016859
851968 - 859929
7962