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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_862160_862687_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
862160 - 862687
Intron Length:
528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TGCTGCCTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
TGCTCTCTGACT
Flanking Amino Acid:
LRQSRLLLLVFFVLVSLVFV
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
70.2
35.9
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
75.7
0.58
0.9
65.6
41
Minor 5ss
26.7
-2.7
3
27.9
37.8
Minor BPS
59.9
0.39
1.7
76.58
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016240
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016939
861504 - 863611
2108